Zarr Utils (empanada.zarr_utils)

empanada.zarr_utils.zarr_fill_instances(array, instances, processes=4)

Fills a zarr array in-place with instances.

Parameters

• array – zarr.Array of size (d, h, w)

• instances – Dictionary. Keys are instance_ids (integers) and values are another dictionary containing the run length encoding (keys: ‘starts’, ‘runs’).

• processes – Integer, the number of processes to run.

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