Index

A

average_edge_between_clusters() (in module empanada.consensus)

AverageMeter (class in empanada.metrics)

B

BCLoss (class in empanada.losses) bounding_box_screening() (in module empanada.consensus)

box_area() (in module empanada.array_utils) box_intersection() (in module empanada.array_utils) box_iou() (in module empanada.array_utils)

C

ComposeMetrics (class in empanada.metrics)

create_graph_of_clusters() (in module empanada.consensus) crop_and_binarize() (in module empanada.array_utils)

E

EMAMeter (class in empanada.metrics) empanada.array_utils module empanada.config_loaders module empanada.consensus module

empanada.losses module empanada.metrics module empanada.zarr_utils module extend_range() (in module empanada.array_utils)

F

F1 (class in empanada.metrics)

I

intersection_from_ranges() (in module empanada.array_utils)

IoU (class in empanada.metrics)

J

join_ranges() (in module empanada.array_utils)

L

load_config() (in module empanada.config_loaders)

M

mask_ioa() (in module empanada.array_utils) mask_iou() (in module empanada.array_utils) merge_boxes() (in module empanada.array_utils) merge_clusters() (in module empanada.consensus) merge_instances() (in module empanada.consensus) merge_objects_from_trackers() (in module empanada.consensus) merge_overlapping() (in module empanada.consensus)

merge_rles() (in module empanada.array_utils) module empanada.array_utils empanada.config_loaders empanada.consensus empanada.losses empanada.metrics empanada.zarr_utils

P

PanopticLoss (class in empanada.losses) PQ (class in empanada.metrics)

push_cluster() (in module empanada.consensus) put() (in module empanada.array_utils)

R

read_yaml() (in module empanada.config_loaders) rle_decode() (in module empanada.array_utils) rle_encode() (in module empanada.array_utils) rle_intersection() (in module empanada.array_utils)

rle_ioa() (in module empanada.array_utils) rle_iou() (in module empanada.array_utils) rle_to_string() (in module empanada.array_utils) rle_voting() (in module empanada.array_utils)

S

split_range_by_votes() (in module empanada.array_utils)

string_to_rle() (in module empanada.array_utils)

T

take() (in module empanada.array_utils)

Z

zarr_fill_instances() (in module empanada.zarr_utils)